David.
I am confused when you say your engine is rapping. Do you mean bogging down and loosing power, or missing. I AM NO DIESEL TECHNICIAN, but I have heard black smoke usually means a fueling issue. and I am confused on why this happens just when you go down hill, unless its the pick up tube in the tank. I would think if you had water in your fuel, you would be seeing white smoke. Also, a good rule of thumb is to drain the tank, and change the fuel filter anytime you get water in your fuel. I wouldn't rely on the fuel filter to get the water out, its pretty easy to take the tank off and drain it. Thats what I had to do with my 330, when I got water in it. I guess the only suggestions I have would be to switch to off road/non taxed fuel, if its avaliable to you, And check your fuel pickup tube in the tank, as they are prone to breaking and falling off. I would also check and clean the screen on the end of the pickup tube. I would also suggest getting the CTM3, and service manuals to your machine, as they are a great help. Good luck, I hope your problems are resolved soon. Those 332 are great machines. I love mine
Hope it helps
Drew